YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187427149, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.61
Transmembrane Helix	10	30	0.90
Non-Cytoplasmic	31	339	0.66
Transmembrane Helix	340	359	0.86
Cytoplasmic	360	365	0.58
Transmembrane Helix	366	388	0.86
Non-Cytoplasmic	389	392	0.55
Transmembrane Helix	393	413	0.66
Cytoplasmic	414	437	0.90
Transmembrane Helix	438	459	0.91
Non-Cytoplasmic	460	469	0.76
Transmembrane Helix	470	493	0.87
Cytoplasmic	494	540	0.93
Transmembrane Helix	541	557	0.96
Non-Cytoplasmic	558	872	0.97
Transmembrane Helix	873	892	0.94
Cytoplasmic	893	898	0.79
Transmembrane Helix	899	918	0.93
Non-Cytoplasmic	919	925	0.73
Transmembrane Helix	926	946	0.87
Cytoplasmic	947	974	0.91
Transmembrane Helix	975	996	0.90
Non-Cytoplasmic	997	1006	0.73
Transmembrane Helix	1007	1029	0.92
Cytoplasmic	1030	1049	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNFFIDRPI FAWVIAIIIM LAGGLAILKL PVAQYPTIAP PAVTISASYP GADAKTVQDT  60
   61 VTQVIEQNMN GIDNLMYMSS NSDSTGTVQI TLTFESGTDA DIAQVQVQNK LQLAMPLLPQ 120
  121 EVQQQGVSVE KSSSSFLMVV GVINTDGTMT QEDISDYVAA NMKDAISRTS GVGDVQLFGS 180
  181 QYAMRIWMNP NELNKFQLTP VDVITAIKAQ NAQVAAGQLG GTPPVKGQQL NASIIAQTRL 240
  241 TSTEEFGKIL LKVNQDGSRV LLRDVAKIEL GGENYDIIAE FNGQPASGLG IKLATGANAL 300
  301 DTAAAIRAEL AKMEPFFPSG LKIVYPYDTT PFVKISIHEV VKTLVEAIIL VFLVMYLFLQ 360
  361 NFRATLIPTI AVPVVLLGTF AVLAAFGFSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM 420
  421 AEEGLPPKEA TRKSMGQIQG ALVGIAMVLS AVFVPMAFFG GSTGAIYRQF SITIVSAMAL 480
  481 SVLVALILTP ALCATMLKPI AKGDHGEGKK GFFGWFNRMF EKSTHHYTDS VGGILRSTGR 540
  541 YLVLYLIIVV GMAYLFVRLP SSFLPDEDQG VFMTMVQLPA GATQERTQKV LNEVTHYYLT 600
  601 KEKNNVESVF AVNGFGFAGR GQNTGIAFVS LKDWADRPGE ENKVEAITMR ATRAFSQIKD 660
  661 AIVFAFNLPA IVELGTATGF DFELIDQAGL GHEKLTQARN QLLAEAAKHP DMLTSVRPNG 720
  721 LEDTPQFKID IDQEKAQALG VSINDINTTL GAAWGGSYVN DFIDRGRVKK VYVMSEAKYR 780
  781 MLPDDIGDWY VRAADGQMVP FSAFSSSRWE YGSPRLERYN GLPSMEILGQ AAPGKSTGEA 840
  841 MELMEQLASK LPTGVGYDWT GMSYQERLSG NQAPSLYAIS LIVVFLCLAA LYESWSIPFS 900
  901 VMLVVPLGVI GALLAATFRG LTNDVYFQVG LLTTIGLSAK NAILIVEFAK DLMDKEGKGL 960
  961 IEATLDAVRM RLRPILMTSL AFILGVMPLV ISTGAGSGAQ NAVGTGVMGG MVTATVLAIF1020
 1021 FVPVFFVVVR RRFSRKNEDI EHSHTVDHH