YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187430326, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	30	0.88
Cytoplasmic	31	38	0.88
Transmembrane Helix	39	61	0.88
Non-Cytoplasmic	62	90	0.93
Transmembrane Helix	91	113	0.92
Cytoplasmic	114	132	0.84
Transmembrane Helix	133	156	0.91
Non-Cytoplasmic	157	176	0.94
Transmembrane Helix	177	198	0.84
Cytoplasmic	199	217	0.86
Transmembrane Helix	218	240	0.86
Non-Cytoplasmic	241	245	0.73
Transmembrane Helix	246	264	0.62
Cytoplasmic	265	298	0.70
Transmembrane Helix	299	322	0.87
Non-Cytoplasmic	323	329	0.61
Transmembrane Helix	330	349	0.87
Cytoplasmic	350	355	0.60
Transmembrane Helix	356	377	0.85
Non-Cytoplasmic	378	415	0.77
Transmembrane Helix	416	435	0.92
Cytoplasmic	436	451	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSEVMRYIL DLGPTVMLPI VIIIFSKILG MKAGDCFKAG LHIGIGFVGI GLVIGLMLDS  60
   61 IGPAAKAMAE NFDLNLHVVD VGWPGSSPMT WASQIALVAI PIAILVNVAM LLTRMTRVVN 120
  121 IDIWNIWHMT FTGALLHLAT GSWMIGMAGV VIHAAFVYKL GDWFARDTRN FFELEGIAIP 180
  181 HGTSAYMGPI AVLVDAIIEK IPGVNRIKFS ADDIQRKFGP FGEPVTVGFV MGLIIGILAG 240
  241 YDVKGVLQLA VKTAAVMLLM PRVIKPIMDG LTPIAKQARS RLQAKFGGQE FLIGLDPALL 300
  301 LGHTAVVSAS LIFIPLTILI AVCVPGNQVL PFGDLATIGF FVAMAVAVHR GNLFRTLISG 360
  361 VIIMSITLWI ATQTIGLHTQ LAANAGALKA GGMVTSMDQG GSPITWLLIQ VFSPQNIPGF 420
  421 IIIGAIYLTG IFMTWRRARG FIKQEKVVLA E