YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187427389, gi...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIGMRLLLG YFLLVAVAAW FVLAIFVKEV KPGVRRATEG TLIDTATLLA ELARPDLLSG  60
   61 DPTHGQLAQA FNQLQHRPFR ANIGGINKVR NEYHVYMTDS QGKVLFDSAN KAVGQDYSRW 120
  121 NDVWLTLRGQ YGARSTLQNP ADPESSVMYV AAPIMDGSRL IGVLSVGKPN AAMAPVIKRS 180
  181 ERRILWASAI LLGIALVIGA GMVWWINRSI ARLTRYADSV TDNKPVPLPE LGSSELRKLA 240
  241 QALESMRVKL EGKNYIEQYV YALTHELKSP LAAIRGAAEI LREGPPPEVV ARFTDNILTQ 300
  301 NARMQALVET LLRQARLENR QEVVLTVVDV AALFRRVSEA CTVQLAEKNI TLHVMPTEVN 360
  361 VAAEPALLEQ ALGNLLDNAI DFTPESGRIT LSAEVDQEHV ALKVLDTGSG IPDYALSRIF 420
  421 ERFYSLPRAN GQKSSGLGLA FVSEVARLFN GEVTLRNVQE GGVLASLRLH RHFT

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.52
Transmembrane Helix	7	27	0.62
Cytoplasmic	28	183	0.55
Transmembrane Helix	184	206	0.95
Non-Cytoplasmic	207	474	0.72