YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187731990, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.68
Transmembrane Helix	7	26	0.96
Cytoplasmic	27	35	0.65
Transmembrane Helix	36	54	0.64
Non-Cytoplasmic	55	66	0.60
Transmembrane Helix	67	90	0.86
Cytoplasmic	91	126	0.95
Transmembrane Helix	127	149	0.91
Non-Cytoplasmic	150	162	0.88
Transmembrane Helix	163	185	0.91
Cytoplasmic	186	192	0.84
Transmembrane Helix	193	213	0.94
Non-Cytoplasmic	214	232	0.90
Transmembrane Helix	233	255	0.88
Cytoplasmic	256	272	0.96
Transmembrane Helix	273	296	0.89
Non-Cytoplasmic	297	325	0.95
Transmembrane Helix	326	349	0.88
Cytoplasmic	350	371	0.90
Transmembrane Helix	372	391	0.97
Non-Cytoplasmic	392	400	0.79
Transmembrane Helix	401	421	0.93
Cytoplasmic	422	428	0.81
Transmembrane Helix	429	448	0.92
Non-Cytoplasmic	449	454	0.79
Transmembrane Helix	455	473	0.97
Cytoplasmic	474	502	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISTPMLVT FCVYIFGMIL IGFIAWRSTK NFDDYILGGR SLGPFVTALS AGASDMSGWL  60
   61 LMGLPGAVFL SGISESWIAI GLTLGAWINW KLVAGRLRVH TEYNNNALTL PDYFTGRFED 120
  121 KSRILRIISA LVILLFFTIY CASGIVAGAR LFESTFGMSY ETALWAGAAA TILYTFIGGF 180
  181 LAVSWTDTVQ ASLMIFALIL TPVIVIICVG GFGDSLEVIK QKSIENVDML KGLNFVAIIS 240
  241 LMGWGLGYFG QPHILARFMA ADSHHSIVHA RRISMTWMIL CLAGAVAVGF FGIAYFNEHP 300
  301 AVAGAVNQNA ERVFIELAQI LFNPWIAGIL LSAILAAVMS TLSCQLLVCS SAITEDLYKV 360
  361 FLRKHASQKE LVWVGRVMVL VVALVAIALA ANPENRVLGL VSYAWAGFGA AFGPVVLFSV 420
  421 MWSRMTRNGA LAGMIIGALT VIVWKQFGWL GLYEIIPGFI FGSIGIVVFS LLGKAPSAAM 480
  481 QKRFAEADAH YHSAPPSRLQ ES