YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187429855, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHSHSHTSS HLPEDNNTRR LLYAFGVTAG FMLVEVVGGF LSGSLALLAD AGHMLTDTAA  60
   61 LLFALLAVQF SRRPPTIRHT FGWLRLTTLA AFVNAIALVV ITILIVWEAI ERFRTPRPVE 120
  121 GGMMMAIAVA GLLANILSFW LLHHGSEEKN LNVRAAALHV LGDLLGSVGA IIAALIIIWT 180
  181 GWTPADPILS IVVSLLVLRS AWRLLKDSVN ELLEGAPVSL DIAELKRRMC REIPEVRNVH 240
  241 HVHVWMVGEK PVMTLHVQVI PPHDHDALLD QIQHYLMAHY QIEHATIQME YQPCHGPDCH 300
  301 LNEGVSGHSH HHH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	42	0.95
Non-Cytoplasmic	43	50	0.72
Transmembrane Helix	51	70	0.92
Cytoplasmic	71	82	0.87
Transmembrane Helix	83	107	0.87
Non-Cytoplasmic	108	121	0.89
Transmembrane Helix	122	143	0.92
Cytoplasmic	144	155	0.90
Transmembrane Helix	156	178	0.90
Non-Cytoplasmic	179	184	0.65
Transmembrane Helix	185	202	0.81
Cytoplasmic	203	313	0.86