YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85667557
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATTVAASR PQSNKQSLWR RFVKGRGLSY CVLAVIGVFW IFPFLWMALG SLKTQREILA  60
   61 KPPKLLPEHA SLANFAKWFG ELNFGTYFTN SMVVAVITVL GNMVFCSMVG YALAKMDFAG 120
  121 KNILFGAVMV TLMVPSVATF VPLFVIISNM GLANSYAALI LPFLCQPIGV FLMRQFISGI 180
  181 PDALMEAARV DGAGELRIFF QIVLPQCGPP LATLSILTFL SSWNNFLWPL VAAQTEEKYT 240
  241 LPVALSLYST GQNATNYSVL LAGAVLVVTP ILLLFVFLQR YFIQGVAGTG IK

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	47	0.91
Non-Cytoplasmic	48	91	0.92
Transmembrane Helix	92	113	0.91
Cytoplasmic	114	122	0.89
Transmembrane Helix	123	146	0.92
Non-Cytoplasmic	147	155	0.79
Transmembrane Helix	156	177	0.93
Cytoplasmic	178	197	0.95
Transmembrane Helix	198	220	0.93
Non-Cytoplasmic	221	256	0.95
Transmembrane Helix	257	278	0.92
Cytoplasmic	279	292	0.88