YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89345267, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQILTSFILA AFVGYAGAWY LGMLEGNFAL LLFLATVVTG VYWLAERFYF LPQRQKAVAL  60
   61 LEADAIKRRE ALVKQGISQV DMNITEARSR LLAQPWWLDW TAGLFPVIIA VFFLRSFLFE 120
  121 PFKIPSGSMI PTLTVGDLIL VNKFHYGVRL PVLNTKISEG TPPQRGDVMV FRYPPKPSLD 180
  181 YIKRVVGVPG DEVAYLNKRL TINGQVIQTV ALPEYFDEDA MRYFKQFEET LGEQKHRLLN 240
  241 DDDRPAFIPG ADDFAFKQNC RYSVEGVVCK VPAGHYFMMG DNRDNSLDSR YWGFVPDKNI 300
  301 VGKAFFVWMN FSSLKRIGSF N

Type	Start	End	Confidence
Cytoplasmic	1	4	0.66
Transmembrane Helix	5	23	0.76
Non-Cytoplasmic	24	27	0.71
Transmembrane Helix	28	46	0.91
Cytoplasmic	47	95	0.90
Transmembrane Helix	96	118	0.90
Non-Cytoplasmic	119	321	0.75