YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85666627
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKIKAFGDW LTKWFTVIVI VWAVFNYFVP QTSLWGKSYT GYFLGIVLFG MGLTLTLDDF  60
   61 KRILTQPLMV VVGTVAHFVI MPLVAVLLCW IFRLDGPLAV GVILVGCCPS GTSSNVMSYL 120
  121 SRGDVALDVS IGILSTLCAP FMIPLLMQWL ASQYVTVPVE SLFLNAVKVV LFPIALGVIC 180
  181 HAIFKEKIEK VTVALPIVSQ VAILLIIGVV VAANGPKLFV ASSLLAIPVV ILHNLCGYAL 240
  241 GFGFSKLMYK VYPKGFRYAQ QKAITFEVGM QDSALGATLA LSSFASNPLA AVPSTFFSVW 300
  301 HNISGSVLSS WWREHDDKHQ IHPDSDNGEK GSAAKASEAG DAVKDESEET VNA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	29	0.95
Non-Cytoplasmic	30	37	0.82
Transmembrane Helix	38	57	0.94
Cytoplasmic	58	67	0.84
Transmembrane Helix	68	91	0.91
Non-Cytoplasmic	92	97	0.79
Transmembrane Helix	98	119	0.91
Cytoplasmic	120	128	0.75
Transmembrane Helix	129	150	0.89
Non-Cytoplasmic	151	161	0.89
Transmembrane Helix	162	184	0.90
Cytoplasmic	185	191	0.91
Transmembrane Helix	192	213	0.93
Non-Cytoplasmic	214	223	0.69
Transmembrane Helix	224	244	0.89
Cytoplasmic	245	353	0.58