YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119025445, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAATIAGHS NKSEYSKKNG YRKSSKTPWG NPIVYFFSLV LVAICITPVL YIIFGGFRTN  60
   61 SQITNHPSGM PNPWVPDNYK TVFESDIFWT ELKNSTIVGI ATMVGVVVLS IMVSFVIARY 120
  121 KFRYAPLMYA LFSAGLMFPM TVGITPLYLL IRNLGLANSL WGLILPQIAF GLPQTIIILV 180
  181 PFLQSIPNEL EEACLLDGCS RLGFFWRMVI PLSMPGVATT GILTFVGSWN AYMLPLFVLS 240
  241 DANKYTLPLG VQMFSSEHSV DTAQVLAFTS LAMIPALICF TIFQKKIVGG LTGAVKG

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	54	0.95
Non-Cytoplasmic	55	96	0.96
Transmembrane Helix	97	118	0.95
Cytoplasmic	119	126	0.88
Transmembrane Helix	127	150	0.90
Non-Cytoplasmic	151	162	0.82
Transmembrane Helix	163	183	0.92
Cytoplasmic	184	203	0.93
Transmembrane Helix	204	227	0.90
Non-Cytoplasmic	228	262	0.92
Transmembrane Helix	263	283	0.94
Cytoplasmic	284	297	0.94