YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84717301, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.90
Transmembrane Helix	31	52	0.84
Cytoplasmic	53	57	0.78
Transmembrane Helix	58	78	0.90
Non-Cytoplasmic	79	84	0.85
Transmembrane Helix	85	104	0.93
Cytoplasmic	105	115	0.88
Transmembrane Helix	116	137	0.90
Non-Cytoplasmic	138	141	0.65
Transmembrane Helix	142	164	0.83
Cytoplasmic	165	180	0.79
Transmembrane Helix	181	202	0.87
Non-Cytoplasmic	203	215	0.77
Transmembrane Helix	216	236	0.83
Cytoplasmic	237	242	0.68
Transmembrane Helix	243	266	0.75
Non-Cytoplasmic	267	268	0.48
Transmembrane Helix	269	286	0.88
Cytoplasmic	287	300	0.80
Transmembrane Helix	301	322	0.90
Non-Cytoplasmic	323	328	0.81
Transmembrane Helix	329	349	0.94
Cytoplasmic	350	359	0.83
Transmembrane Helix	360	381	0.93
Non-Cytoplasmic	382	389	0.75
Transmembrane Helix	390	411	0.91
Cytoplasmic	412	635	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGEAQQPA PRCFSAIVHP RNDALDTFMT HAPAWLINSF IYLAAAVVAV PLAKKLGLGS  60
   61 IIGYLAAGIA IGPWGLGLVT NVQDILHFAE FGVVLMLFLI GLELEPQRLW SLRRPIFGWG 120
  121 SAQLLSCAGL LTGTAMAFGI HWTTALVAGL GLALSSTAIA LQSINERNLM RTSSGQAGFS 180
  181 ILLFQDVAAI PILALLPLLG AIGGENEAVA HTSRALEAIK IVAAIASIIL GGRLLLRPVL 240
  241 RWIANSGTPE IFTAASLLLV VGIAALMQLV GLSMALGAFL AGVLLAESEY RRELETDIEP 300
  301 FKALLLGLFF IAVGMSIDFG VLWKFPGQML AILAGFLGLK LLAIYGLAYA MKLPYQERPV 360
  361 FALLLAQGGE FAFVVFQAAA GAHVFSMETA SLLIGAVALS MLISPLLLVA IDKLLLPRYA 420
  421 NGKKSTLEEI SEPQEAPVII AGFGRYGQIV GRMLLAQGIS ATVLDHDADL IETVRAFGYR 480
  481 VFYGDATRLD LLRTAGAAQA KILVLSVDDV EQSLKIVDVV RENFPQLQIV ARARDVTHWN 540
  541 ALRDRGVMRV ERELFESSLR SARTVLELLG QPPELAQQAA GRFRQHNLEL FERMYPHRND 600
  601 REKVIAVARQ GRLQLEAQMK QEREQLAQQS RSAQD