YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89346610, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNYFLKRLL GLTPTLLIVA VLVFLFVHML PGDPARLAAG QDADQQTVEL VRQELGLDRP  60
   61 LPEQFVSYFA HVVKADFGTS LRTRRPVSTE IAERFMPTLL LTLSSMVWAV IFGMTIGITS 120
  121 AVYRNEWPDR LGMTIAVSGI SFPAFALGML LMQVFSVQLG WFPTVGADSW RHYILPSLTL 180
  181 GAAVAAVMAR FTRASFVEVI QEDFVRTARA KGLKERTVIF KHCLRNALIP VVTMMGLQFG 240
  241 FLLGGSIVVE AVFNWPGLGR LLVDAVTMRD YPVIQALVLL FSMEFILINL IVDVLYGFIN 300
  301 PTIRYK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	30	0.90
Non-Cytoplasmic	31	99	0.97
Transmembrane Helix	100	123	0.86
Cytoplasmic	124	130	0.93
Transmembrane Helix	131	155	0.85
Non-Cytoplasmic	156	171	0.87
Transmembrane Helix	172	192	0.91
Cytoplasmic	193	226	0.94
Transmembrane Helix	227	249	0.86
Non-Cytoplasmic	250	275	0.84
Transmembrane Helix	276	299	0.88
Cytoplasmic	300	306	0.92