YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72607607, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFKPRRPR NGSSQTPRPF RRNKIMAPDP VPESRRAARQ RFLKTRGIYL LPNAFTTAAL  60
   61 FCGFFAVVQA MNVRFEIAAI AIFVAMVLDG MDGRVARMTH TQSAFGEQFD SLSDMVSFGV 120
  121 APALVMYEWV LKDLGRWGWL AAFVYCSGAA LRLARFNTNI GVVDKRFFQG LPSPAAAALI 180
  181 AGFVWLATDN RVPMKLGWLP WVAFVLTIYA GVTMVSNAPF YSGKALDVRH RVPFAAILLV 240
  241 VVAFVLVSSD PPLMLFCLFV LYGLSGYVFW AYMAIRGRAN PARSSQRDH

Type	Start	End	Confidence
Cytoplasmic	1	46	0.98
Transmembrane Helix	47	68	0.94
Non-Cytoplasmic	69	74	0.79
Transmembrane Helix	75	95	0.85
Cytoplasmic	96	110	0.84
Transmembrane Helix	111	131	0.85
Non-Cytoplasmic	132	136	0.85
Transmembrane Helix	137	156	0.93
Cytoplasmic	157	166	0.92
Transmembrane Helix	167	188	0.93
Non-Cytoplasmic	189	196	0.92
Transmembrane Helix	197	221	0.86
Cytoplasmic	222	229	0.84
Transmembrane Helix	230	247	0.95
Non-Cytoplasmic	248	253	0.73
Transmembrane Helix	254	274	0.93
Cytoplasmic	275	289	0.93