YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84715734, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.81
Transmembrane Helix	7	28	0.91
Cytoplasmic	29	57	0.85
Transmembrane Helix	58	76	0.92
Non-Cytoplasmic	77	82	0.70
Transmembrane Helix	83	103	0.93
Cytoplasmic	104	123	0.83
Transmembrane Helix	124	149	0.87
Non-Cytoplasmic	150	164	0.81
Transmembrane Helix	165	186	0.85
Cytoplasmic	187	239	0.87
Transmembrane Helix	240	259	0.91
Non-Cytoplasmic	260	264	0.64
Transmembrane Helix	265	287	0.88
Cytoplasmic	288	296	0.79
Transmembrane Helix	297	318	0.91
Non-Cytoplasmic	319	332	0.77
Transmembrane Helix	333	355	0.87
Cytoplasmic	356	389	0.57
Transmembrane Helix	390	415	0.80
Non-Cytoplasmic	416	416	0.17
Transmembrane Helix	417	433	0.48
Cytoplasmic	434	469	0.51
Transmembrane Helix	470	492	0.72
Non-Cytoplasmic	493	507	0.49
Transmembrane Helix	508	528	0.87
Cytoplasmic	529	576	0.52
Transmembrane Helix	577	596	0.86
Non-Cytoplasmic	597	602	0.40
Transmembrane Helix	603	625	0.87
Cytoplasmic	626	746	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGNSAALIL ALVCGLIAVG YGFWARSWIL SQDAGNARMQ EISAAIQTGA AAYLARQYKT  60
   61 IAIVGVILAL LIGVFLDGKT AVGFVIGAFL SGACGFIGMN VSVRANVRTA QAATRGIGPA 120
  121 LDVAFRGGAI TGMLVVGLGL LGVTGFFWFL VGNGNYTPTA RLADLLNPLI GFAFGSSLIS 180
  181 IFARLGGGIF TKGADVGADL VGKVEAGIPE DDPRNPAVIA DNVGDNVGDC AGMAADLFET 240
  241 YAVTLIATMV LGALLVAASP INAVLYPLAL GAVSIIASII GCFFVKASPG MTNVMPALYK 300
  301 GLAVAGVLSL IAFYFVTTWL MPDNAIYASG SQMKLFGACA VGLVLTAALV WVTEYYTGTQ 360
  361 YAPVRHIAQA STTGHGTNII AGLGVSMRST AWPVIFVCIA ILVSFNLAGL YGIAIAATSM 420
  421 LSMAGIVVAL DAYGPITDNA GGIAEMADMP PEVRAVTDPL DAVGNTTKAV TKGYAIGSAG 480
  481 LAALVLFADY THKLESYGRA ISFDLSDPMV IVGLFIGGLI PYLFGAMAME AVGRAAGAVV 540
  541 VEVRRQFKEI AGIMEGTAKP EYGRAVDMLT TAAIKEMIIP SLLPVVVPIL VGLLLGPKAL 600
  601 GGLLMGTIVT GLFVAISMCT GGGAWDNAKK YIEDGHHGGK GSDAHKAAVT GDTVGDPYKD 660
  661 TAGPAINPLI KIINIVALLI VPLMMKFHGG TAQAAPVVPV QAPTAISAPA TTPVAPALPA 720
  721 PAPLQAPDAA AIPTPAASAP ASAASQ