YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72609020, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLVLLLLG IEYLRTRWRG LTVLGWLWVV AGVGIFIDAL DGALHFPIEL FAWLFLIEGL  60
   61 ATLAVAGSGV GGQRILRYVK GIAVVVAAGL VFAGHHHGHF LLSMIFGTLF LVDGLLQCTS 120
  121 AWMVRYRRWN VAFAWGVVEI LLAIFFYQPY PTHYAGTVPY CLGLLLMFGG MHMLSLAARV 180
  181 RRLTRNPAFV TSPAPAIVPD IDTAPDVPRF TQSEWDGPPA DHERALTVHV WTPTGTSKAE 240
  241 AQRYPVIDRY IAAVDVNGVI STGHAALESP EGIYISLYPA VEIDRSPDEF TRLLRATREN 300
  301 DVPGLFQPDY ATESKAWCPS TVRVRIRNYD PAKLDAFWSS YRQTVTYNLT HRNCSSTVSN 360
  361 ALEAALDGAV WRLKGERAGW GAFVRLLLTP ELWVAAQIRK RAVTMAWTPG LTLDYARALS 420
  421 MLADPRPFAW WKVARSAVTA IIASRRAWRE QDSAALSPGG SEAASAK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	49	0.76
Transmembrane Helix	50	70	0.92
Cytoplasmic	71	77	0.77
Transmembrane Helix	78	96	0.93
Non-Cytoplasmic	97	101	0.68
Transmembrane Helix	102	122	0.90
Cytoplasmic	123	130	0.74
Transmembrane Helix	131	148	0.96
Non-Cytoplasmic	149	155	0.75
Transmembrane Helix	156	176	0.94
Cytoplasmic	177	467	0.91