YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCTA2_POLNA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTNARKPI YKSLYVQVLA AVTIGVLLGH FSPELGAQMK PLGDGFIKLI KMIIAPIIFC  60
   61 TVVIGIAGME DMKKVGKTGG LALLYFEVMS TLALVIGLIV VNVLQPGSGM HIDPASLDTK 120
  121 SIAAYTAPGK MQGTVDFLLN VIPTSVVDAF AKGEILQVLL FSVLFGFALH RFGGRGTMVF 180
  181 DFIEKFSHVL FDIVGIIMKV APIGAFGAMA FTIGKYGLGS LFSLGKLMGA FYLTCLIFVF 240
  241 VVLGIVSRLH GFSVFKFVRY IKEELLIVLG TSSSESVLPR MMEKLENLGA RKSVVGLVIP 300
  301 TGYSFNLDGT SIYLTMAAVF IAQATDTPMS LTQQITLLAV LMLTSKGAAG ITGSGFIVLA 360
  361 ATLSAVGGVP VAGLALILGI DRFMSEARAL TNLVGNGVAT LVVAKWTGDL DMQRLHQGLD 420
  421 QPSLQESQEP EVILDQQVAH MAVAKSHG

Type	Start	End	Confidence
Cytoplasmic	1	12	0.91
Transmembrane Helix	13	32	0.94
Non-Cytoplasmic	33	48	0.88
Transmembrane Helix	49	69	0.93
Cytoplasmic	70	80	0.89
Transmembrane Helix	81	101	0.94
Non-Cytoplasmic	102	154	0.91
Transmembrane Helix	155	174	0.90
Cytoplasmic	175	188	0.93
Transmembrane Helix	189	213	0.86
Non-Cytoplasmic	214	228	0.85
Transmembrane Helix	229	252	0.89
Cytoplasmic	253	300	0.87
Transmembrane Helix	301	322	0.49
Non-Cytoplasmic	323	355	0.48
Transmembrane Helix	356	380	0.89
Cytoplasmic	381	448	0.64