YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|121604876, gi...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFYEVMRR QGISRRSFLK YCSLTATSLG LGSSFVPQIA HAMETKPRTP VLWLHGLECT  60
   61 CCSESFIRSA HPLAKDVVLS MISLDYDDTL MAAAGHQAEA ILEEIMVKYK GNYILAVEGN 120
  121 PPLNQDGMSC IIGGKPFIEQ LKHVAKDAKA IISWGSCASW GCVQAAKPNP TQATPIHKVI 180
  181 FDKPIIKVPG CPPIAEVMTG VITYMLTFDR IPELDRQGRP KMFYSQRIHD KCYRRSHFDA 240
  241 GQFVEKFDDE SARKGYCLYK VGCKGPTTYN ACSTTRWNEG TSFPIQAGHG CIGCSEDGFW 300
  301 DKGSFYDRLT GVDQFGIEAN ADKVGGAAAG VVGAAAVAHA AVSAIKRATQ KSDKPKSDAA 360
  361 LSDH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.63
Transmembrane Helix	21	41	0.66
Non-Cytoplasmic	42	364	0.96