YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115351552, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQESSAVLN TPSAARARAA KRPDPVSESR VVRWLLTGIA LAFLAFFLVV PLAAVFFEAL  60
   61 RKGVGFYLES LADPDAWSAI KLTLTVAVIA VPLNLVFGVC ASWAIAKFEF RGKALLTTLI 120
  121 DLPFSVSPVI SGLVYVLLFG AQGWLGPWLQ DHDVQIIFAV PGIVLATIFV TFPFVARELI 180
  181 PLMQAQGTDE EEAARVLGAS GWQIFRRVTL PNVKWGLLYG VILCNARAMG EFGAVSVVSG 240
  241 HIRGVTDTMP LHVEILYNEY NFAAAFAVAS VLALLALVTL ALKLLAERHL AAELAGARDD 300
  301 VPAHAGPVAA ISSKS

Type	Start	End	Confidence
Cytoplasmic	1	33	0.96
Transmembrane Helix	34	57	0.89
Non-Cytoplasmic	58	81	0.92
Transmembrane Helix	82	105	0.89
Cytoplasmic	106	117	0.84
Transmembrane Helix	118	139	0.88
Non-Cytoplasmic	140	155	0.78
Transmembrane Helix	156	176	0.95
Cytoplasmic	177	214	0.96
Transmembrane Helix	215	235	0.84
Non-Cytoplasmic	236	261	0.85
Transmembrane Helix	262	282	0.95
Cytoplasmic	283	315	0.94