YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|121605954, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGLMSSITA VVLAAFVGYG AAWYFGVVEG NFSALLFLAT VVTGIYWLAE RFYFLPQRRK  60
   61 AVAALEANAA TRQAELAKMG ISQVDDNTAE AKSRLIMQPW WLDWTAGLFP VIIIVFLLRS 120
  121 FLFEPFKIPS GSMIPTLLVN DLILVNKFHY GVRLPVINLK VLDNHSPERG DVMVFRYPPK 180
  181 PSLDYIKRVV GIPGDEVAYL NKKLTINGKP LPKTPLPDFF DADSMRYAKQ FEETNAERSY 240
  241 RLLNDDERPS FIAGADNFQF RENCRYSTEG VVCKVPEGHY FMMGDNRDNS LDSRYWGFVP 300
  301 EKNIVGKAFF VWMNFGNLKR IGSFD

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	27	0.91
Non-Cytoplasmic	28	31	0.88
Transmembrane Helix	32	54	0.85
Cytoplasmic	55	99	0.98
Transmembrane Helix	100	122	0.91
Non-Cytoplasmic	123	325	0.86