YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|171995429, gi...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQSLDIKR VSATTTPPPT AREPVTGSVA KLIDVSKCIG CKACQTACME WNDLRDEVGT  60
   61 NVGVYDNPAD LTEHSWTVMR FSEYENPAGD LEWLIRKDGC MHCEDPGCLK ACPSPGAIVQ 120
  121 YNNGIVDFHE ENCIGCGYCV TGCPFNVPRI SKKDHRAYKC TLCSDRVAVG QEPACVKTCP 180
  181 TGAIVFGTKE DMKQHAAERI EDLKERGFEH AGLYDPQGVG GTHVMYVLHH ADKPSLYHGL 240
  241 PDDPSISPMV RLWKGIAKPL AVAGIALTAL AGFFHYIRVG PNEVTAEDEA AARDEARRIE 300
  301 EDAK

Type	Start	End	Confidence
Cytoplasmic	1	254	0.74
Transmembrane Helix	255	277	0.74
Non-Cytoplasmic	278	304	0.90