YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84664598, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	40	0.72
Non-Cytoplasmic	41	53	0.79
Transmembrane Helix	54	73	0.91
Cytoplasmic	74	84	0.78
Transmembrane Helix	85	106	0.92
Non-Cytoplasmic	107	112	0.77
Transmembrane Helix	113	134	0.92
Cytoplasmic	135	149	0.90
Transmembrane Helix	150	170	0.91
Non-Cytoplasmic	171	190	0.87
Transmembrane Helix	191	213	0.91
Cytoplasmic	214	227	0.88
Transmembrane Helix	228	247	0.86
Non-Cytoplasmic	248	248	0.33
Transmembrane Helix	249	267	0.63
Cytoplasmic	268	277	0.39
Transmembrane Helix	278	300	0.80
Non-Cytoplasmic	301	305	0.47
Transmembrane Helix	306	328	0.91
Cytoplasmic	329	334	0.50
Transmembrane Helix	335	357	0.84
Non-Cytoplasmic	358	369	0.48
Transmembrane Helix	370	391	0.86
Cytoplasmic	392	630	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFLLNATI YLGAAVVAVP IAIRLGLGSV LGYLVAGLLI GPITGIDGGE TEGLMHFAEF  60
   61 GVVMMLFIIG LELDPGALWD MRHRLMGLGG LQVLLTTGVV TAGVMVLGEG WQVALAVGLM 120
  121 LALSSTAIVL QTLTEKGLMQ SPGGRSSFSV LLTQDIAVIP MLLILPFLAS SGAHHGGEEH 180
  181 SSVSIVENLP SWGVALVTLG AIAAIILGGR YLVRPVFNFI GRARLREMFT AVALLIVVGI 240
  241 ATLMNMVGLS PALGAFLAGV MLANSEFRHQ LETDIEPFKG LLLGLFFITV GAGMDVRGFI 300
  301 ADPARLIGLA VLLMAAKAAV LAPLGYFFHL RGRNLWLFTL GLAQAGEFGF LMVTFSAQQG 360
  361 VITNAIGQDV LTVIALSMLL TPLAFIAYDF YDRRASEKTE HHEEDEIDHT SDVIIVGIGR 420
  421 FGQVVNRLVR SVGYETTVLD NNLQTIQMMR KFGVKGFFGD PTRPDLLKAA GLLSAKVLVV 480
  481 AVNSPEACMK IVAHARAQRP DIHIIARARD RTHVYGLYQA GANDIVREMF DSSLRVGRYV 540
  541 LENIGLSEFE AHEAERMFYK HDRHIIRELA NYWDPKLRAD ENEAYRERAM ALDKDMESAM 600
  601 LTQLMALDQD PKPSRDDDFD EDDEDEAKAS