YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|217423832, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRFAPLAA RAVPVCVPAF FSPRRAAERA PRGRRRAPAA LAALASGTAA LPVSAADMNA  60
   61 VNHAASLASG VVVGSAAPSL GVGAVLQTLV GLAVVIGLVF GCAWLARRFG LQPQRRGGAL 120
  121 KIVASVAVGG KESATVVEIG DTWLVLGVAP GNVRLLHTLP AGSAGVIGAP AGGGLTRSPG 180
  181 APGGTAMSGP LPEGASFGAR FRDAMLGEAA KRFKRDGGKD R

Type	Start	End	Confidence
Signal Peptide	1	55	0.53
N-region	1	46
H-region	47	52
C-region	53	55
Cleavage Site	55	56
Non-Cytoplasmic	56	83	0.87
Transmembrane Helix	84	106	0.90
Cytoplasmic	107	221	0.70