YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|237506029, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSVTYAQLN GWLTAFLWPF VRMLALVAIA PVTGHRSTPV RVKIGLAGFM ALVVAPTLPP  60
   61 MPVATVFSAQ GVWIIVNQFL IGAALGFTMQ IVFAAIEAAG DIIGLSMGLG FATFFDPHSS 120
  121 GATPVMGRFL NAVAILAFLA FDGHLQVFAA LVDSFRLVPV SADLLRAAGW QTLVAFGAAI 180
  181 FEMGLLLALP VVAALLIANL ALGILNRAAP QIGIFQVGFP VTMLVGLLLV QLMAPNLIPF 240
  241 VGRLFDTGVD FVGRVAAGMH

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.81
Transmembrane Helix	12	34	0.86
Cytoplasmic	35	43	0.69
Transmembrane Helix	44	66	0.83
Non-Cytoplasmic	67	80	0.49
Transmembrane Helix	81	115	0.72
Cytoplasmic	116	126	0.54
Transmembrane Helix	127	148	0.82
Non-Cytoplasmic	149	172	0.61
Transmembrane Helix	173	203	0.78
Cytoplasmic	204	211	0.67
Transmembrane Helix	212	234	0.88
Non-Cytoplasmic	235	260	0.72