YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84513859, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASYISTFV LTLLLAIGLA FFLRAASKDR TTVVDVSSKL PPLEVLSGIS NWLESRGWKR  60
   61 EGGDIERKVL RFQGNVLFSP LLAVFLSILC ALGGGCLGLV ICQLFPVIAW WPLVLVGLGP 120
  121 LAGLFYRQRA FRIESVELQL ISSTEDSSSV LRLRAHRDEL IAMESELGKN LALESDGSLV 180
  181 SSPI

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.80
Transmembrane Helix	5	25	0.78
Cytoplasmic	26	76	0.83
Transmembrane Helix	77	101	0.90
Non-Cytoplasmic	102	106	0.74
Transmembrane Helix	107	126	0.94
Cytoplasmic	127	184	0.86