YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71740272, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLQRGAGH GRRSPDHLPQ MHRRGHLTMG RWALFSAISV VGLLLDQASK LYIHRSMELF  60
   61 QSIPVIDGFF NIFYIRNRGA AFSFLSQASW RLPFFIAVSL IASAVILVAF GRLRNDQKLA 120
  121 QASLAMIFSG AVGNLIDRVR MGEVIDFLDV YWGNHHWPAF NVADSFICVG VALLALDMLR 180
  181 EERRAKRAV

Type	Start	End	Confidence
Cytoplasmic	1	27	0.90
Transmembrane Helix	28	49	0.86
Non-Cytoplasmic	50	89	0.81
Transmembrane Helix	90	111	0.92
Cytoplasmic	112	118	0.78
Transmembrane Helix	119	139	0.79
Non-Cytoplasmic	140	156	0.92
Transmembrane Helix	157	179	0.89
Cytoplasmic	180	189	0.98