YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84503024, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	33	0.86
Non-Cytoplasmic	34	50	0.85
Transmembrane Helix	51	75	0.83
Cytoplasmic	76	86	0.84
Transmembrane Helix	87	108	0.92
Non-Cytoplasmic	109	113	0.77
Transmembrane Helix	114	132	0.94
Cytoplasmic	133	139	0.82
Transmembrane Helix	140	163	0.90
Non-Cytoplasmic	164	170	0.88
Transmembrane Helix	171	194	0.91
Cytoplasmic	195	213	0.92
Transmembrane Helix	214	234	0.91
Non-Cytoplasmic	235	241	0.68
Transmembrane Helix	242	263	0.88
Cytoplasmic	264	305	0.92
Transmembrane Helix	306	324	0.93
Non-Cytoplasmic	325	335	0.85
Transmembrane Helix	336	357	0.91
Cytoplasmic	358	365	0.78
Transmembrane Helix	366	384	0.93
Non-Cytoplasmic	385	398	0.61
Transmembrane Helix	399	419	0.84
Cytoplasmic	420	427	0.75
Transmembrane Helix	428	448	0.92
Non-Cytoplasmic	449	464	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVAILFIMV VGLMLIGVPI AVSLGTSSIL FLLWFSDTSL ASIAQTLMQA FVGHFTLLAI  60
   61 PFFILASSFM STGGVAKRII RFSIACVGHL RGGLAIAGVF ACMIFAALSG SSPATVVAIG 120
  121 SIVIGAMTQA GYTKDFAAGV ICNAGTLGIL IPPSIVMVVY ATATDVSVGR MFLAGVVPGL 180
  181 MAGLMLMTAI YIMARIRDMP AGDWKGFREI WLSFKDAFWG LMLIVIIMVG IYGIPGVTGA 240
  241 IFTPTEAAAV ASVYAFIAAV FIYRDMGPLA TAGDAPNLPL YRRPQALVTA FFHHDTRRTL 300
  301 FEAGKLTVTL MFVIANALIL KHVLTDEQVP QHVAEAMLSA GLGPITFLIV VNVILLIGGQ 360
  361 FMEPSGLLVI VAPLVFPIAI ELGIDPIHLG IIMVVNMEIG MITPPVGLNL FVTSGVAGMP 420
  421 MMRVVKAAAP FLAVLFVFLI LVTYVPWIST WLPTLVMGPE LITN