YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118503709, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSLCFNLT TLAYMVSMVV FFVYLATRNS GVGLAGSLLA YAGLGVQTVA IALRWKESYD  60
   61 IGYGHAPLSN LYESVVFFSW TIILIYLFID LKYRHRVIGA FVVPFALLAM AWAQLGLNSS 120
  121 IEPLVPALQS NWLLYHVITC FLGYAAFAVA CGVSCMYLLK ARHEMSSSLD VTAGGLMGLF 180
  181 PPTRVLDDLN YRAIMIGFPL LTIGIITGAA WANYAWGTYW SWDPKETWSL IVWFIYAAFL 240
  241 HARFTKGWVG KRAAWLSIVG FCATLFCYLG VNLFLSGLHS YGAN

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.64
Transmembrane Helix	7	26	0.90
Cytoplasmic	27	31	0.67
Transmembrane Helix	32	53	0.75
Non-Cytoplasmic	54	69	0.83
Transmembrane Helix	70	89	0.92
Cytoplasmic	90	96	0.86
Transmembrane Helix	97	116	0.95
Non-Cytoplasmic	117	133	0.90
Transmembrane Helix	134	159	0.89
Cytoplasmic	160	192	0.93
Transmembrane Helix	193	212	0.93
Non-Cytoplasmic	213	226	0.79
Transmembrane Helix	227	245	0.92
Cytoplasmic	246	253	0.85
Transmembrane Helix	254	276	0.91
Non-Cytoplasmic	277	284	0.83