YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71838142, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPETPQERI ETTESIKRGI YILPNLVTTA SMFAGFYSLV STLNGDYYMA AILIFISAVC  60
   61 DGLDGKVARL TGTTSKFGVE YDSLADVVAF GVTPALMVYS WALRPYGRLG WLAAFLFVAC 120
  121 GALRLARFNV QVNTVESKRF VGLPIPAAAC MVAATVLLFH HLNRFPQELI QNPSMFKRVG 180
  181 LITLIYLLAF LMVSNIRYYS FKDPALIRRQ PFGFLMLAVV LLIIVVAEPV VMTFAIMLCY 240
  241 TLSGPIGFLL GWPRRRRLEK AMRKGHESLR Q

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	40	0.94
Non-Cytoplasmic	41	46	0.85
Transmembrane Helix	47	67	0.87
Cytoplasmic	68	82	0.82
Transmembrane Helix	83	103	0.87
Non-Cytoplasmic	104	108	0.86
Transmembrane Helix	109	128	0.94
Cytoplasmic	129	139	0.92
Transmembrane Helix	140	162	0.92
Non-Cytoplasmic	163	178	0.91
Transmembrane Helix	179	199	0.91
Cytoplasmic	200	209	0.77
Transmembrane Helix	210	227	0.93
Non-Cytoplasmic	228	232	0.74
Transmembrane Helix	233	253	0.93
Cytoplasmic	254	271	0.97