YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118580214, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRDQRFDSA DRIIKVGFWV NALLMVFKLS AGHWGRSDAV FADGIESACD FVAIFSTMVA  60
   61 LRLGRQPFDE KHPYGHGRAE SLSALLISLV ILATGGWILY DSVVSIIRHD FKSPGMIAVA 120
  121 AAFVTILVKE WLYRFTQKTG RELESPSLLA IAKDHRKDAL TSISTLAGVL GAFFGFGIMD 180
  181 PLAAGLTSFF ILHIGLETYR GAAHDLMDGS VPVNFIEKVT QLAESVERVE HVHDIRGRRS 240
  241 GQYMIIDLKL DMDPAMTVKE SHDIAKQVKK LIFDGFPNVG DVMIHINPHD EEHEDMIRL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	32	0.89
Non-Cytoplasmic	33	41	0.71
Transmembrane Helix	42	63	0.86
Cytoplasmic	64	81	0.86
Transmembrane Helix	82	100	0.95
Non-Cytoplasmic	101	113	0.76
Transmembrane Helix	114	133	0.90
Cytoplasmic	134	159	0.92
Transmembrane Helix	160	184	0.81
Non-Cytoplasmic	185	299	0.73