YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84500898, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.65
Transmembrane Helix	10	44	0.72
Non-Cytoplasmic	45	55	0.67
Transmembrane Helix	56	73	0.93
Cytoplasmic	74	84	0.83
Transmembrane Helix	85	106	0.92
Non-Cytoplasmic	107	112	0.71
Transmembrane Helix	113	133	0.93
Cytoplasmic	134	149	0.87
Transmembrane Helix	150	170	0.89
Non-Cytoplasmic	171	204	0.90
Transmembrane Helix	205	227	0.89
Cytoplasmic	228	240	0.76
Transmembrane Helix	241	257	0.94
Non-Cytoplasmic	258	261	0.52
Transmembrane Helix	262	280	0.76
Cytoplasmic	281	290	0.67
Transmembrane Helix	291	312	0.75
Non-Cytoplasmic	313	318	0.69
Transmembrane Helix	319	338	0.92
Cytoplasmic	339	347	0.76
Transmembrane Helix	348	369	0.90
Non-Cytoplasmic	370	378	0.84
Transmembrane Helix	379	401	0.87
Cytoplasmic	402	625	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGFLYQATI YLAAAVIAVP IAARLGLGSV LGYLAAGILI GPVLGLVGHE THDLQHFAEF  60
   61 GVVMMLFLIG LELEPRALWD MRHRLIGLGG LQVGVTTLAV MAGFMALGYV WQIALAAGMT 120
  121 LALSSTAIVL QTLSEKGLIR TAGGRSAFSV LLTQDIAVIP MLAVLPLLAL PSLGLVANPD 180
  181 GSLTRSSLEE DAHHTLSLVE GLPGWGVTLV TLGAVAAVIL TGVYLTAPVF RFIHSARLRE 240
  241 MYTALALVIV VGIAFLMNLV GLSPALGTFL AGVVLANSEF RHELESDIEP FKGLLLGLFF 300
  301 ITVGAGIDFG VLLQAPGTIL GMAATLILIK GVILFVIGRA FGLRRRRLML FTLSLAQAGE 360
  361 FGFVLLSFSS QQQVIPPVLA ERLLLVIALS MLITPLLFLL YEWLSKKMGD PATEAQEADE 420
  421 IDEDGPVIIA GIGRFGQIVN RLAQSSGVRT VVLDNDMRTI EVMRRFGFKG YFGDPTRPDI 480
  481 LRAAGLEKAR VLVAAMDSPA AVTQLVHYAR KSRPDLHIIA RAHDRRHVYE LYQAGADDIV 540
  541 RETFDASLRA GRYVLENAGF SDYEAARLEQ AFYHHDREAI RELAELWDPE VPADQNADYV 600
  601 TRAKELEKDL EAALHAVLSD DDEAA