YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71743098, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVVGGRSCS DYFAKAWKNG ETDMLPGLSV SRWIHILTLS LLSLALASGL AYAEPATLPS  60
   61 LSIGVGTATK PGEFTTTIQI FFLLTILSLA PGLLIMTTAF TRIVVVLSFL RTAMGTQGAP 120
  121 SNQVILGLSM FLTFFIMSPV WQQINNEAYQ PWKAQQISQT IAIDRAIMPV RRFMLSQTRE 180
  181 KDLALFVSLS NLPRPKNAND IPTLTIIPAF MISELRTAFQ IGFLIYIPFI VVDMVVASVL 240
  241 MSMGMMMLPP VMISLPFKIL LFVLVDGWGL VISSLVKSFG

Type	Start	End	Confidence
Cytoplasmic	1	32	0.93
Transmembrane Helix	33	53	0.93
Non-Cytoplasmic	54	79	0.83
Transmembrane Helix	80	104	0.85
Cytoplasmic	105	121	0.72
Transmembrane Helix	122	142	0.84
Non-Cytoplasmic	143	218	0.75
Transmembrane Helix	219	244	0.81
Cytoplasmic	245	254	0.52
Transmembrane Helix	255	276	0.84
Non-Cytoplasmic	277	280	0.59