YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67676718, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	40	0.76
Non-Cytoplasmic	41	45	0.66
Transmembrane Helix	46	65	0.89
Cytoplasmic	66	106	0.87
Transmembrane Helix	107	131	0.88
Non-Cytoplasmic	132	152	0.91
Transmembrane Helix	153	174	0.87
Cytoplasmic	175	180	0.76
Transmembrane Helix	181	201	0.90
Non-Cytoplasmic	202	207	0.84
Transmembrane Helix	208	228	0.95
Cytoplasmic	229	248	0.86
Transmembrane Helix	249	269	0.91
Non-Cytoplasmic	270	290	0.84
Transmembrane Helix	291	312	0.91
Cytoplasmic	313	330	0.92
Transmembrane Helix	331	353	0.90
Non-Cytoplasmic	354	373	0.86
Transmembrane Helix	374	395	0.87
Cytoplasmic	396	403	0.84
Transmembrane Helix	404	423	0.93
Non-Cytoplasmic	424	429	0.68
Transmembrane Helix	430	449	0.95
Cytoplasmic	450	460	0.92
Transmembrane Helix	461	483	0.92
Non-Cytoplasmic	484	497	0.93
Transmembrane Helix	498	519	0.92
Cytoplasmic	520	530	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARQSQATP EDGESAGPAS GGLLRSGLVV STMTMLSRVL GLARDVVIAT LFGAGSGADA  60
   61 FFVAFKIPNF MRRLFAEGAF NQAFIPVLSE YATQRTREEV RELLDAVAGS LGVVLALISA 120
  121 VAMLIAPWLV WLFAPGFSAD PGKLALTADM LRLTFPYLWL ISLTAFAGSV LNTWNRFAVP 180
  181 AFTPVLLNLS LIGAALGLTP WMQDPSMALA WGVLIAGVVQ LGFQVPFLAR LGLMPRPWPN 240
  241 FRHPGVRRIL TLMAPALFAV SVSQINLLLD TVLASLLASG SVSWLYYSDR LVELPLGVFG 300
  301 VALGTVILPA LSKRHAEQSP EHFAKMLDWA LRAVLLIGLP AGLALILLAE PLLVSLFHYG 360
  361 AMTDHDIVMA ARSLRAYALG LLPFMLIKVL APGYFARQDT KTPVKIGVFA MLANMVFNLL 420
  421 LIWPLAHAGL ALATALSACF NAGLLGWGLK RRGVLQFQSG WGRYALTLGG GCMVMGGGLW 480
  481 WLAPEWHVWL DWGVWQRAAT LLGLTLGGAV VYFGWLALCG VRLRHFRLRG