YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92113459, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYLNELLFG LYPYVAGTVF LIGSLLRFDH GQYTWKAGSS QLLDRKRMRL GSNLFHIGIL  60
   61 VILVGHLVGL LTPHWVYAPF ISAGHKQVLA ILVGGIAGVM CLAGGMILLH RRLTNPRVRA 120
  121 SSSRADIFIL ALLMVQVSLG LLTIPFAMHH LDGGVMLLLA DWAQSIVFFK GGAAEHLAEV 180
  181 GGIYKLHILV GLTIILVFPF TRLVHVWSAP LGYLGRRYQV VRKRG

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	28	0.88
Cytoplasmic	29	51	0.89
Transmembrane Helix	52	72	0.91
Non-Cytoplasmic	73	87	0.83
Transmembrane Helix	88	109	0.95
Cytoplasmic	110	126	0.92
Transmembrane Helix	127	148	0.94
Non-Cytoplasmic	149	185	0.73
Transmembrane Helix	186	206	0.91
Cytoplasmic	207	225	0.67