YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84394437, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.96
Cytoplasmic	42	70	0.94
Transmembrane Helix	71	91	0.91
Non-Cytoplasmic	92	96	0.84
Transmembrane Helix	97	114	0.96
Cytoplasmic	115	133	0.85
Transmembrane Helix	134	153	0.94
Non-Cytoplasmic	154	171	0.91
Transmembrane Helix	172	191	0.93
Cytoplasmic	192	199	0.76
Transmembrane Helix	200	220	0.91
Non-Cytoplasmic	221	234	0.79
Transmembrane Helix	235	256	0.92
Cytoplasmic	257	262	0.86
Transmembrane Helix	263	284	0.92
Non-Cytoplasmic	285	289	0.81
Transmembrane Helix	290	311	0.92
Cytoplasmic	312	338	0.91
Transmembrane Helix	339	357	0.96
Non-Cytoplasmic	358	360	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIWLAELLQ PHLSFFRLFE YLSFRAIASI LTALCLSLWM GPRLIERLQM LQIGQVVRND  60
   61 GPESHFSKRG TPTMGGVMIL AAIIITVLMW ADLSNPYVWA VLVVLAGYGA VGFVDDYRKV 120
  121 VRKNTDGLIA RWKYFWQSAI ALVVAFALYA HGHDTAATQL VVPFFKDVMP QLGLLYIVLT 180
  181 YFVIVGTSNA VNLTDGLDGL AIMPTVMVAA GFAVIAWATG NVNFAAYLHI PYIPYTSELV 240
  241 VVCTAIVGAG LGFLWFNTYP AQVFMGDVGS LALGGALGVI AVLVRQELVL VIMGGVFVME 300
  301 TLSVILQVGS YKLRGQRIFR MAPIHHHYEL KGWPEPRVIV RFWIISMVLV LVGLATLKVR 360
  361