YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92112703, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVIENLLAV IVVLGLLITF HEFGHFWVAR RCGVKVLRFS VGFGKPLWSR FDRHGTEFAV  60
   61 AAIPLGGYVK MLDEREGPVA PEEQAHAFNR KSVWARIAIV SAGPLANFLL AFVAYWALFI 120
  121 YGTATVAPVI GDVTPDSPAA QGGLQRGQEI VAVQGEPTPS WGEVNLKLVA AIGADGTLDV 180
  181 TTRTSEGATP TQHRVPVNDW LVRQNPPQPL ASLGVTPWRP ELPAVLGEVL DDGRAHQAGL 240
  241 QRGDRIVSVD GVAVDDWMAF VERVRANPET PLTLQVTRDG ERREITLTPA VREQEDGSTI 300
  301 GYIGAGVQPS EWPERYRREI RYGPLDAVGE AVAKTGEMSL LTLDSIRKML VGLISPSNLS 360
  361 GPVTIARIAG DSARDGVESF ISFLAYLSIS LGVLNLLPIP VLDGGHLVYY IIEAVRGRPV 420
  421 PEAVQAFGLR VGIALVGSLM LMALYFDLMR L

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.83
Transmembrane Helix	7	29	0.89
Cytoplasmic	30	96	0.80
Transmembrane Helix	97	119	0.84
Non-Cytoplasmic	120	348	0.64
Transmembrane Helix	349	369	0.42
Cytoplasmic	370	379	0.61
Transmembrane Helix	380	402	0.80
Non-Cytoplasmic	403	425	0.68
Transmembrane Helix	426	448	0.90
Cytoplasmic	449	451	0.65