YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92115054, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	38	0.97
Non-Cytoplasmic	39	53	0.84
Transmembrane Helix	54	76	0.90
Cytoplasmic	77	87	0.82
Transmembrane Helix	88	108	0.82
Non-Cytoplasmic	109	112	0.51
Transmembrane Helix	113	128	0.85
Cytoplasmic	129	138	0.67
Transmembrane Helix	139	162	0.78
Non-Cytoplasmic	163	180	0.84
Transmembrane Helix	181	201	0.92
Cytoplasmic	202	240	0.92
Transmembrane Helix	241	260	0.93
Non-Cytoplasmic	261	266	0.73
Transmembrane Helix	267	284	0.86
Cytoplasmic	285	300	0.72
Transmembrane Helix	301	322	0.85
Non-Cytoplasmic	323	336	0.64
Transmembrane Helix	337	353	0.86
Cytoplasmic	354	359	0.44
Transmembrane Helix	360	388	0.51
Non-Cytoplasmic	389	389	0.33
Transmembrane Helix	390	409	0.55
Cytoplasmic	410	413	0.58
Transmembrane Helix	414	435	0.90
Non-Cytoplasmic	436	436	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLLSRPAV RLVERYLPDP YIFVLILTLV AAIAAMLVER QSPLAIMRYW GDGFWGLLSF  60
   61 SMQMLLVLVT GFMLASSPPV KRLLDRIARL AKSPAGAIVL VSLVSLAASW INWGFGLVIG 120
  121 ALFAKALARQ VRVDYRLLIA SAYSGFVVWH GGLAGSIPLT IATEGHFTAD QIGVIPTSET 180
  181 IFAFFNLAIV LAMFVAVPLV NRFMLPDERD SVYIDPAQLD DAPRDLGPAT RPAERLEKSS 240
  241 WLSWLVGIPG LLFLLDHFVF RDGGLNLNVV NFLFLSLAIV LHRTPRSLLD SLHEAIKGGT 300
  301 GIVIQFPFYA GIMAIIMQSG LAQTLSEGFV AISTAQTLPF WSFISAGIVN LFVPSGGGQW 360
  361 AVQAPVMLPA AASLGADIPR VAMAVAWGDA WTNLLQPFWA LPMLAIAGLK AKDIMGFCLI 420
  421 QLVVTGVIIA LGLTFL