YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84375427, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIGVPRETL AGETRVAASP KSVEQLLKLG FEVCVESQAG ALASFEDAAY EQAGAKVVTA  60
   61 DEAWKSDIIF KVNAPIVDES KNEIDLLKDG ATLVSFIWPA QNPELMEQLS TRSINVMAMD 120
  121 SVPRISRAQA LDALSSMANI AGYRAVVEAA HEFGRFFTGQ ITAAGKVPPA KVLVAGAGVA 180
  181 GLAAIGAAGS LGAIVRSFDV RPEVKEQVES MGAEFLEVDF KEDTSAGDGY AKEMSEAFNK 240
  241 KAEELYAAQA KDVDIIITTA LIPGRPAPKL ITKEMVDSMS AGSVIVDLAA ANGGNCEYTV 300
  301 ADQVITTANG VKVVGYTDMV GRLPTQSSQL YATNLVNLLK LLCKEKDGNI NIDFEDVVLR 360
  361 GVTVVKEGEV TWPAPPIQVS AQPQQQAKPK AVRPEPKVQE PVSPIKKAAG MAVAVGAFAW 420
  421 IASVAPAAFL SHFTVFVLAC VVGYYVVWNV SHSLHTPLMS VTNAISGIIV VGALLQIGQG 480
  481 SGVVTFLSFI AVLIASINIF GGFTVTKRML EMFRKD

Type	Start	End	Confidence
Cytoplasmic	1	130	0.66
Transmembrane Helix	131	147	0.41
Non-Cytoplasmic	148	171	0.71
Transmembrane Helix	172	195	0.76
Cytoplasmic	196	402	0.90
Transmembrane Helix	403	422	0.81
Non-Cytoplasmic	423	428	0.64
Transmembrane Helix	429	448	0.93
Cytoplasmic	449	457	0.75
Transmembrane Helix	458	477	0.93
Non-Cytoplasmic	478	483	0.77
Transmembrane Helix	484	505	0.93
Cytoplasmic	506	516	0.91