YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84393827, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.93
Transmembrane Helix	8	31	0.88
Non-Cytoplasmic	32	49	0.93
Transmembrane Helix	50	74	0.87
Cytoplasmic	75	84	0.88
Transmembrane Helix	85	106	0.92
Non-Cytoplasmic	107	134	0.95
Transmembrane Helix	135	156	0.91
Cytoplasmic	157	189	0.93
Transmembrane Helix	190	213	0.80
Non-Cytoplasmic	214	233	0.83
Transmembrane Helix	234	254	0.93
Cytoplasmic	255	286	0.97
Transmembrane Helix	287	310	0.90
Non-Cytoplasmic	311	327	0.94
Transmembrane Helix	328	350	0.91
Cytoplasmic	351	366	0.90
Transmembrane Helix	367	389	0.89
Non-Cytoplasmic	390	405	0.91
Transmembrane Helix	406	427	0.90
Cytoplasmic	428	464	0.95
Transmembrane Helix	465	485	0.81
Non-Cytoplasmic	486	513	0.86
Transmembrane Helix	514	533	0.96
Cytoplasmic	534	541	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKNYLWNT SSGIIAVLLV LPILAIFTTA VGETDELFSH LMSTVMPTYA YNTVVLVIGT  60
   61 MFLSLVFGIP SAWIMAMCRV PGERVLQWAL VLPLAMPGYI VGYIFTDWFD FAGPVQVLLR 120
  121 DLTGWGPGEY WFPDIRTLSG AIIVLSLVLY PYVYLLCRAA FMEQNISLLQ SARLLKCSPW 180
  181 ESFRRISLPL VRPSMAVGLS LVAMETIGDF GTVSYFAVNT LTTAVYDTWL GYSSLTAAAK 240
  241 ISAIMLVIVI LLLSSERYSR RKQKLFQNQF SSREDFRYDL SGWKKWLALF WCWGLVCVAF 300
  301 LFPLGQLMIY AYKYFAQSWT PEFREYAINS LYVSVVAAII GVIIAMIVNF NQRVSPSKKN 360
  361 QAYMRIASMG YAVPGTVLAI GVMVPVLFMD HLVNDIAKVM EWGRPGLIFS GSMFALIFAM 420
  421 VVRFSAVAIG SIESSLSKVS PSLDMASKTM GCNTNQMLRR VHLPLIKRGA LIAGLLVFIE 480
  481 SMKELNAALL LRPFNFETLA TYVYNYASDE HLELAAMPAV LLVLVGLIPL IIVNRSLEQK 540
  541 H