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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|84376143, gi|...
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPMKNLAQY YVDLLVKLGI VRFSILLALA LVALAVVVQV GITLALKGNV DDIDIVRSVF  60
   61 FGLVITPWAV YFLSVVVDQL EESRQRLAKL VSKLGDMRER DQELNNKLQL NIEKLNQEIE 120
  121 EREKAEEARA EAMHDLENEV FQRERTQLEL AERTALLRSF IDASPDLIYY RNEDGVFSGC 180
  181 NRAVEELTGK TEKDLVGLTP WDVYSKEIAQ QVVETDKKVF ADNQALTYDQ WLEYPDGRKS 240
  241 YFELRKVPFY SKEGRHLGLV GFGRDITERK EHQESLEKAS RDKTTFISTI SHELRTPLNG 300
  301 IIGLSRMLLD SQLTTEQRKQ MQTIKVSAVT LGNIFNDIID MDKFDRRKLE LFPTPLNFED 360
  361 FVVEIESISA LMAEQKGLRF DLERLSDLPA AVEVDGTRLR QVLWNLVSNA MKFTKDGGVV 420
  421 MTVSAEIDGD FANITMEVED TGIGIPESEI EKIFAMYYQV KSGTDNLHAV GTGIGLAVSQ 480
  481 QLINMMDGHI EVTSEEGFGS TFTVSIRVPV NHDTQALIKT PRKQSNLKIF MVEDIELNIT 540
  541 VARSLLESLG HEVTVVMTGK EAQIVFNPKD YDLVLLDIQL PDMTGFDIAQ YYREKYSKLP 600
  601 PLVALTANVL NNKQEYFQKG MDEAISKPLS VRAIQDVISD LIEDAPEAID TAKGIDTAKN 660
  661 VEKVTGIEKV TGVKKVTGAE KVVGVKKVTA SKPTLSTIDT TLLDIDMLES YVDIVGSKPV 720
  721 LDSIVMFEDM MPEYMEILNS NMVAKDQDSI VSEAHKIKGA AGSIGLKRIQ QVAQKAQSPD 780
  781 MPAWWENISD WVDEINNEYQ NDIEVLKSWL NQR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle