YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91798521, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCRQNVSPGR ILMDVKRLLL VIPLAVLAYL LVIQWNADYG QNNVEHSAPT SVAQGTTDSD  60
   61 DASEGLSAPS ASNAGNNASP DSAGMPGEKS QTDANGLIQV RTDVLDLRID PRGGDVVYAA 120
  121 LPKHKASLDS DQPFVLLSDN NVRSYVAKSG LQLEGHEGRI TYTPEQTEYT LGEDQDSLTV 180
  181 DLKAEVNGVN VIKRFVFDRN AYAVHVEYRL DNESQTPVSA RFIGQLARDD SDDPSQGVSM 240
  241 GMKSFLGATF STQESNYEKI SFEDIRDGEF NNVESEGGWV AMIQHYFTSA WVPEQNQENL 300
  301 YYANIDSRDR NVAAFAGPSQ QIAPGETTRM AATLYMGPKI QDRLEAIAPH LELTVDFGWL 360
  361 WFIANPLFWL LAKIHSLIGN WGWSIVLLTV IVKIVLFPLS AKAYKSMAKM RKMGPEMKRI 420
  421 KEQYGDDRQK MSQEMMKFYQ KEKINPLGGC LPIVVQMPVF IALYWMLLES VELRHAPFIL 480
  481 WINDLSAQDP YFILPIIMGA SMFVQQLLNP TPPDPMQAKI MKMLPVVFTF FFLWFPAGLV 540
  541 IYWICNNVIS ILQQWIITRK IEADGESGKT SKAKS

Type	Start	End	Confidence
Cytoplasmic	1	17	0.61
Transmembrane Helix	18	37	0.49
Non-Cytoplasmic	38	380	0.60
Transmembrane Helix	381	401	0.89
Cytoplasmic	402	444	0.93
Transmembrane Helix	445	468	0.90
Non-Cytoplasmic	469	489	0.89
Transmembrane Helix	490	509	0.90
Cytoplasmic	510	523	0.86
Transmembrane Helix	524	545	0.92
Non-Cytoplasmic	546	575	0.92