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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113475260, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.77
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYTIKFTML LTTLTLVSCD KIPFMNKQLS QPEKLTFVAK KSGTPKNYSA LNRLAQQTMV  60
   61 EIVSEGYLVG DDKYILKGSG VIIGRKDFVY YVLTANHIFN MNDIFYVFIR SKKLGKAGEV 120
  121 TGLKFINRYP QEDLALIAFA SFTNYRVMEL GDVSQLDDNN QVYVAGWPGY DNRENFQFTR 180
  181 AKVTNSQMGN NLTYKPIELE NGLYKGMSGG AVLNEAGQLV GIHLGLTKVD EDREGVLIST 240
  241 FLRMVSPEVK DILERPTFLI ILQAFVLLLL ACFFFIVFDQ YVYPWKKIWK KKKTSVAILP 300
  301 LPTREDQTIT KFLIQNAESY FNQGLKYRNQ RKYDLAIAEF NQAIKLNPKY AEAYYNRGNV 360
  361 YNTQGKYDLA LVDYNQAIKF NPKYTQVYNN KGIIYNKQGK YDLALAEFNQ AIKLNPKYSK 420
  421 VYNNRGIVYN NQRKYDLAIA EFNQAIKLNP KYAEAYYNRG NIYNNQGKYD LALAEFNQAI 480
  481 KFKPKYAKAY YNRGLVYKTQ RNIERVISDF EKAAKLYKEQ QNQRWYQNSL DKLKKLQYIY 540
  541 SEQEKSEKGQ VFTFEVVRLN NSGNIISRTQ GRAQQKIEHL GNDIKLEIVY IPGGSFLMGS 600
  601 PTEEVGRYSD EGPQHRVTLQ PFYMSKYPIT QDQYQVIMGN NPSRFRGGRC PVETVSWHDA 660
  661 TEFCEKLSQK TGRDYRLPSE SQWEYACRAG TTTPFYFGET ITPDFANYYG NSSYGNGPKG 720
  721 KYRQQTTYVG IFPPNAFGLY DMHGNVWEWC ADEWHDNYDG APTDGSVWLD GNKNRSPLRG 780
  781 GSWVYCPYYC RSAIRSLFLP RDVHNYDFGF RVVCNSRRTF 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle