YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84387730, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	33	0.86
Non-Cytoplasmic	34	50	0.91
Transmembrane Helix	51	75	0.83
Cytoplasmic	76	86	0.81
Transmembrane Helix	87	108	0.92
Non-Cytoplasmic	109	113	0.74
Transmembrane Helix	114	132	0.93
Cytoplasmic	133	139	0.85
Transmembrane Helix	140	163	0.91
Non-Cytoplasmic	164	170	0.88
Transmembrane Helix	171	194	0.90
Cytoplasmic	195	216	0.85
Transmembrane Helix	217	236	0.89
Non-Cytoplasmic	237	240	0.69
Transmembrane Helix	241	257	0.83
Cytoplasmic	258	291	0.77
Transmembrane Helix	292	313	0.83
Non-Cytoplasmic	314	325	0.69
Transmembrane Helix	326	347	0.91
Cytoplasmic	348	354	0.66
Transmembrane Helix	355	378	0.86
Non-Cytoplasmic	379	387	0.54
Transmembrane Helix	388	406	0.84
Cytoplasmic	407	415	0.67
Transmembrane Helix	416	437	0.91
Non-Cytoplasmic	438	453	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMLFLFLMV IAFMLVGVPI AISLGLSSVI FLLMHSDASL ASVAQTLFNA FAGHYTLLAI  60
   61 PFFILASSFM STGGVAKRII RFAIAMVGWF RGGLAMASVV ACMMFAALSG SSPATVVAIG 120
  121 SIVIAGMIKN GYTKEFAAGV ICNAGTLGIL IPPSIVMVVY AAATDVSVGR MFLGGVIPGL 180
  181 LAGVMLMIAI YIAARIKKIP AQPFVGWGEM FAAAKDASWG LLLIVIILGG IYGGIFTPTE 240
  241 AAAVAAVYAF FIANFIYKDM GPFADKKNTK PALVKVFQTF FHKDTKDTLY DAGKLTIMLL 300
  301 FIIANALILK HVLTEERIPQ MITESMLSAG LGPITFLIVV NVLLLIGGQF MEPSGLLIIV 360
  361 APLVFPIAIA LGIDPIHLGI MMVVNMEIGM ITPPVGLNLF VTAGVAKMSM MNVVKAALPW 420
  421 VGVMFLFLII VTYVPWVSTW LPTTLMGPEI ITK