YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84387635, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	248	0.99
Transmembrane Helix	249	271	0.88
Cytoplasmic	272	276	0.61
Transmembrane Helix	277	297	0.82
Non-Cytoplasmic	298	302	0.75
Transmembrane Helix	303	325	0.91
Cytoplasmic	326	336	0.77
Transmembrane Helix	337	355	0.85
Non-Cytoplasmic	356	385	0.86
Transmembrane Helix	386	406	0.91
Cytoplasmic	407	434	0.91
Transmembrane Helix	435	457	0.86
Non-Cytoplasmic	458	472	0.71
Transmembrane Helix	473	494	0.85
Cytoplasmic	495	503	0.64
Transmembrane Helix	504	522	0.95
Non-Cytoplasmic	523	539	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNVFKALLL MAVSAQLAFA GITDEASFTK ALVGKKTSDK ELAIDWVIET QTEDVSKPIL  60
   61 DGWLNGNLYY FNEKQSEQYK QLYLIQNIKT ATSAQSVWTD STLNIENARQ FKKVRVNNKL 120
  121 RGILRGEIAS IGLNSGNPDV RYKAVLDLLG TKDADIIERL TELRTNESDG KVAELMDLSL 180
  181 AIATSLNNSA TIEDRVASIE RVGDFKHSVV LKTLNQLLSS EQDPKVLAAA ERAMDGYQQS 240
  241 QALYSGVETV FFGLSLGSVL VLAGIGLAIT FGVMGVINMA HGELIMIGAY TTYVMQLLMP 300
  301 NHIGLALILS IPAAFIVSGL VGIVIERSVI RHLYGRPLET LLATFGISLI LQQAVRSIFS 360
  361 PLNRSVSTPE WMSGALQLNP MLSLTYNRLY IILFCGLVFM GLLMVLKKTP LGLQVRAVSQ 420
  421 NRGMARAMGI RSERVDAMTF GLGSGVAGVA GVALSQLTNV GPNMGQAYII DSFMVVVFGG 480
  481 VGNLWGTLVA GLSLGLFNKI LEPWAGAVLA KILVLVFIIL FIQKRPRGLF PQRGRAAEG