YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84386893, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAVAGTGY VGLSNAMLLA QNHEVVAVDI IEEKVTMLNK KQSPIVDGEI EHFLSNKQLN  60
   61 FRATTDKAAY KNAEFVIIAT PTDYDPKSNY FNTSSVESVI KDVMSINPGA VMVIKSTVPV 120
  121 GYTAQIKEDL GCDNIMFSPE FLREGKALYD NLHPSRIIVG ECSERAKVFA NLLVEGAEKE 180
  181 NIDVLFTNST EAEAVKLFSN TYLAMRVSYF NELDSYAEAH GLDSRQIIEG VGLDPRIGNH 240
  241 YNNPSFGYGG YCLPKDTKQL LANYQDVPNN IVGAIVDANR TRKDFIAESI IKRSPKIVGI 300
  301 YRLIMKAGSD NFRASSIQGI MKRLKAKGIE VVVFEPVLEE EHFFNSKVYS DLEEFKAVSD 360
  361 VIVSNRMVDE ISDVADKVYT RDLFGSD

Type	Start	End	Confidence
Signal Peptide	1	20	0.57
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	387	0.99