YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84386832, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.78
Transmembrane Helix	45	61	0.74
Non-Cytoplasmic	62	72	0.40
Transmembrane Helix	73	94	0.89
Cytoplasmic	95	96	0.44
Transmembrane Helix	97	116	0.58
Non-Cytoplasmic	117	124	0.63
Transmembrane Helix	125	143	0.95
Cytoplasmic	144	156	0.83
Transmembrane Helix	157	179	0.87
Non-Cytoplasmic	180	192	0.85
Transmembrane Helix	193	211	0.89
Cytoplasmic	212	218	0.73
Transmembrane Helix	219	239	0.94
Non-Cytoplasmic	240	258	0.86
Transmembrane Helix	259	279	0.87
Cytoplasmic	280	313	0.84
Transmembrane Helix	314	330	0.46
Non-Cytoplasmic	331	337	0.37
Transmembrane Helix	338	360	0.81
Cytoplasmic	361	365	0.37
Transmembrane Helix	366	387	0.77
Non-Cytoplasmic	388	401	0.58
Transmembrane Helix	402	428	0.82
Cytoplasmic	429	437	0.60
Transmembrane Helix	438	456	0.90
Non-Cytoplasmic	457	457	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHNIKGLAD MSESKTEILN QDANNGILEK LFKIKAHGSS VKNELVGGVT TFATMAYIIF  60
   61 VNPQIMAASG MDAGAVFVAT CIGAAIGCLL MGLFANWPVG LAPGMGLNAF FSFTVVSEMG 120
  121 YSWEVALGAV FISGILFVGM SFYKVRQWII ESIPVSLRYS MTAGVGLFLG LIGLKTAGIV 180
  181 VENPATLVSL GDFTKPEALL AAIAFLIIAV LSERKVFGAV LIGILSVTLV GMMLGLVHYN 240
  241 GFFAAPPSLA PTFLKMDIMG ALDVSMISVI LAFLFVNMFD TAGTLMGVAE RANLTNPETG 300
  301 KIEGLSKALK ADSISSVAGA CVGCPPVTSY VESAAGVAAG ARTGLSAIVV GVLFLAAIFL 360
  361 SPLAGMIPAY ATSGALIYVA FVMMSSMQHV DWKDFTNGAP AAITALMMPL TFSIANGIAL 420
  421 GFITYTVLKL ATGKTKDVSI SMYFLAAIFV AKLVFIG