YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116690560, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLEDHLSQ YAAYHRDARN IATHLVGIPM IVFAVEVLLS RPALGMLAGI ALSPALLLAV  60
   61 VSALFYLRLD LRFGIVMTGL LALGLWAAQS LAPLRTAQWL AIGIGAFVVG WIVQFVGHWF 120
  121 EGRKPAFVDD LVGLIVGPLF VVAEVAFFVG LRGDVRREVE RRAGPVHGGA HSHV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	39	0.87
Non-Cytoplasmic	40	45	0.58
Transmembrane Helix	46	67	0.89
Cytoplasmic	68	72	0.62
Transmembrane Helix	73	92	0.80
Non-Cytoplasmic	93	98	0.48
Transmembrane Helix	99	120	0.89
Cytoplasmic	121	130	0.49
Transmembrane Helix	131	151	0.87
Non-Cytoplasmic	152	174	0.56