YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116688291, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADESDLDKT EAATPRRREK AREEGQVARS RELASFALLA AGFYGAWLLA GPSGAHLQAM  60
   61 LRGAFTFDRA TAFDTHRMLS AAGSASLEGF AALLPLLALT GVAALLAPMA LGGWLISQKT 120
  121 FELKFDRLNP ISGLGRIFSI QGPIQLGMSI AKTLVVGGIG GIAIWRSKDE LLGLATQPLG 180
  181 AALPDALHLV AVCCGTTVAG MLVVAGLDVP YQLWQYNKKL RMTKEEVKRE HRENEGDPHV 240
  241 KGRIRQQQRA IARRRMMAAV PKADVVVTNP THFAVALQYT DGEMRAPKVV AKGVNLVAAR 300
  301 IRELAAEHNV PLLEAPPLAR ALYHNVELER EIPGSLYSAV AEVLAWVYQL KRFRSEGGAF 360
  361 PAMPVDLDVP AELDKGTSVA ADDEREEAED TLGKQGNAA

Type	Start	End	Confidence
Cytoplasmic	1	32	0.94
Transmembrane Helix	33	55	0.83
Non-Cytoplasmic	56	91	0.89
Transmembrane Helix	92	116	0.88
Cytoplasmic	117	143	0.81
Transmembrane Helix	144	165	0.81
Non-Cytoplasmic	166	185	0.87
Transmembrane Helix	186	211	0.86
Cytoplasmic	212	399	0.89