YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84379198, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTENNNASQS VSTKKRKKAP LIATAIMLSL GLAGAGYWYG YGQYFESTDN AYLQGDITNI  60
   61 SPKVSGYIVK SYVSDNQSVK QGDLLVQIDD RDYQSALAQA NAHLSVVQSS VHNLIAKQTL 120
  121 QRSQINQAES RVDSAQAEYE RAIQQVVRSR SLLKRNYASQ DEVDSMVAQQ KVTQAELEEA 180
  181 KANLVASNDQ LIVIASEIEQ ANASVTEAQA QRDQAQLNLD YTKVYAPADG VIGKRSVREG 240
  241 LLIQAGAPLM SLVPNNQVWI EANFKETQLS GIHKGQTVEV ELDAFPGQPL EGVVDSFSPA 300
  301 TGAKFALLPP ENATGNFTKI VQRVPVKIII PDQQELKGRL LPGLSVVATI DKRG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.56
Transmembrane Helix	21	40	0.57
Non-Cytoplasmic	41	354	0.99