YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84385639, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.96
Transmembrane Helix	19	37	0.94
Non-Cytoplasmic	38	57	0.88
Transmembrane Helix	58	77	0.93
Cytoplasmic	78	86	0.90
Transmembrane Helix	87	108	0.93
Non-Cytoplasmic	109	112	0.79
Transmembrane Helix	113	135	0.87
Cytoplasmic	136	153	0.87
Transmembrane Helix	154	175	0.93
Non-Cytoplasmic	176	182	0.83
Transmembrane Helix	183	202	0.96
Cytoplasmic	203	242	0.98
Transmembrane Helix	243	264	0.85
Non-Cytoplasmic	265	287	0.90
Transmembrane Helix	288	307	0.92
Cytoplasmic	308	317	0.80
Transmembrane Helix	318	336	0.96
Non-Cytoplasmic	337	344	0.84
Transmembrane Helix	345	367	0.93
Cytoplasmic	368	377	0.82
Transmembrane Helix	378	400	0.89
Non-Cytoplasmic	401	408	0.83
Transmembrane Helix	409	430	0.94
Cytoplasmic	431	450	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHIDRLSTD KIDSTYTRLR WQLFLGIFVG YAGYYLVRKN FSLAMPYLIE QGYSRGELGI  60
   61 ALAAVSIAYG LSKFLMGSVS DRSNPRYFLS GGLLMSALVM FCFGFMPWAT GSITAMFILL 120
  121 FLNGWFQGMG WPACGRTMVH WWSRKERGEI VSVWNVAHNV GGGLIGPMFL LGLWAFNDDW 180
  181 RTAFYVPAFF ATLVAIFVWF TVRDTPQSCG LPPIEEHKDD YPDDYDTSHE KEMTAKEIFF 240
  241 KYVFSNKLLW SIAIANAFVY LIRYGVLDWA PVYLKEAKDF SVDKSSWAYF LYEWAGIPGT 300
  301 LLCGWISDKL FKGRRAPAGI LFMVLVTVAV LVYWLNPAGN PTVDMLALIA IGFLIYGPVM 360
  361 LIGLYALELA PKKAAGTAAG LTGLFGYLGG AVAANAVLGF MVDHYGWDGG FMILVGACVA 420
  421 SIICLLYAFL GEREHHKQKE LEQQKEALTQ