YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116693044, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLVLLLLG IEYLRTRWRG LTVLGWLWVA AGIGIFVDAL DGALHFPIEL FAWLFLIEGL  60
   61 ATLAVAGSGV GGQRILRYVK GIAVVMAAGL VFAGHHHGHF LLSMIFGTLF LVDGLLQCTS 120
  121 AWMVRYRRWH VAFAWGVVEI LLAIFFFQPY PTHYAGTVPY CLGLLLMFGG MHMLSLAARV 180
  181 RRLTRNPAFA TSPTPALAPD LDDAPDQPQF AQSEWDGPPA DGERALTVHV WTPTGTSKAE 240
  241 AQRYPVIDRY IAAVDVNGVI STGHAALESP EGIYISLYPG VEIDRSPDEF TRILRATREN 300
  301 DVPGLFQPDY ATESKAWCPS TVRVRIRNYD PAKLDAFWSS YRQNTTYNLT YRNCSSTVSN 360
  361 ALEAALDGAV WRLKGARAGW GAFVRLLLTP ELWVAAQIRK RAVTMAWTPG LTLDYARALS 420
  421 MLADPRPFAW WKVARSAVSA IMASRRAWRE QDSAALSPGG SEAVSMK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	49	0.75
Transmembrane Helix	50	70	0.92
Cytoplasmic	71	77	0.77
Transmembrane Helix	78	96	0.93
Non-Cytoplasmic	97	101	0.68
Transmembrane Helix	102	122	0.90
Cytoplasmic	123	130	0.74
Transmembrane Helix	131	149	0.94
Non-Cytoplasmic	150	155	0.78
Transmembrane Helix	156	176	0.93
Cytoplasmic	177	467	0.92