YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COXX_BURCJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.95
Transmembrane Helix	22	41	0.91
Non-Cytoplasmic	42	47	0.72
Transmembrane Helix	48	70	0.93
Cytoplasmic	71	90	0.96
Transmembrane Helix	91	112	0.95
Non-Cytoplasmic	113	117	0.88
Transmembrane Helix	118	138	0.94
Cytoplasmic	139	145	0.88
Transmembrane Helix	146	165	0.96
Non-Cytoplasmic	166	171	0.83
Transmembrane Helix	172	193	0.94
Cytoplasmic	194	213	0.97
Transmembrane Helix	214	235	0.92
Non-Cytoplasmic	236	240	0.80
Transmembrane Helix	241	261	0.93
Cytoplasmic	262	272	0.96
Transmembrane Helix	273	294	0.88
Non-Cytoplasmic	295	300	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTLSQSPG SRFSQYMALT KPRVTQLAVF CAVIGMFLAT PGMVPWHVLI GGTVGIWLLA  60
   61 GAAFAINCLV EQKIDAMMRR TAWRPSARGE ITTPQILLFS AVLGSVGAWT LYTFTNPLTM 120
  121 WLTIATFVGY AVIYTLLLKP MTPQNIVIGG ASGAMPPALG WAAVTGAVPG DAWILVLIIF 180
  181 VWTPPHFWVL ALYRRKDYEN AGLPMLPVTH GEKFTRLHIL LYTVILFAVT LMPFISGMSG 240
  241 AVYLTSAVLL GAVFLAYAWK IHRDYSDELA RKAFRYSIVY LSLLFAALLV DHYARPLLGV 300
  301